Recent Publications
- Current Challenges in Vaccinology.
Kennedy RB, Ovsyannikova IG, Palese P, Poland GA
Frontiers in immunology. 2020
PMID: 32670279
- Vitamin B12 and folic acid alleviate symptoms of nutritional deficiency by antagonizing aryl hydrocarbon receptor.
Kim DJ, Venkataraman A, Jain PC, Wiesler EP, DeBlasio M, Klein J, Tu SS, Lee S, Medzhitov R, Iwasaki A
Proceedings of the National Academy of Sciences of the United States of America. 2020 Jul 7
PMID: 32571957
- Enhancing scientific discoveries in molecular biology with deep generative models.
Lopez R, Gayoso A, Yosef N
Molecular systems biology. 2020 Sep
PMID: 32975352
- Vaccination with Aedes aegypti AgBR1 Delays Lethal Mosquito-Borne Zika Virus Infection in Mice.
Wang Y, Marin-Lopez A, Jiang J, Ledizet M, Fikrig E
Vaccines. 2020 Mar 25
PMID: 32218189
- Immunologically distinct responses occur in the CNS of COVID-19 patients.
Song E, Chow RD, Jiang R, Zamecnik CR, Loudermilk RP, Dai Y, Liu F, Geng B, Chiarella J, Israelow B, Casanovas-Massana A, Ko AI, Ring A, Kleinstein SH, Spudich S, Wilson MR, Iwasaki A, Farhadian SF
bioRxiv : the preprint server for biology. 2020 Sep 12
PMID: 32935102
- Squalene emulsion-based vaccine adjuvants stimulate CD8 T cell, but not antibody responses, through a RIPK3-dependent pathway.
Kim EH, Woodruff MC, Grigoryan L, Maier B, Lee SH, Mandal P, Cortese M, Natrajan MS, Ravindran R, Ma H, Merad M, Gitlin AD, Mocarski ES, Jacob J, Pulendran B
eLife. 2020 Jun 9
PMID: 32515732
- TRiC/CCT Complex, a Binding Partner of NS1 Protein, Supports the Replication of Zika Virus in Both Mammalians and Mosquitoes.
Wang Y, Uraki R, Hwang J, Fikrig E
Viruses. 2020 May 8
PMID: 32397176
- Smooth Muscle Cell Reprogramming in Aortic Aneurysms.
Chen PY, Qin L, Li G, Malagon-Lopez J, Wang Z, Bergaya S, Gujja S, Caulk AW, Murtada SI, Zhang X, Zhuang ZW, Rao DA, Wang G, Tobiasova Z, Jiang B, Montgomery RR, Sun L, Sun H, Fisher EA, Gulcher JR, Fernandez-Hernando C, Humphrey JD, Tellides G, Chittenden TW, Simons M
Cell stem cell. 2020 Apr 2
PMID: 32243809
- Functional interpretation of single cell similarity maps.
DeTomaso D, Jones MG, Subramaniam M, Ashuach T, Ye CJ, Yosef N
Nature communications. 2019 Sep 26
PMID: 31558714
- IL-5R? marks nasal polyp IgG4- and IgE-expressing cells in aspirin-exacerbated respiratory disease.
Buchheit KM, Dwyer DF, Ordovas-Montanes J, Katz HR, Lewis E, Vukovic M, Lai J, Bankova LG, Bhattacharyya N, Shalek AK, Barrett NA, Boyce JA, Laidlaw TM
The Journal of allergy and clinical immunology. 2020 Jun
PMID: 32199912
- Distribution and storage of inflammatory memory in barrier tissues.
Ordovas-Montanes J, Beyaz S, Rakoff-Nahoum S, Shalek AK
Nature reviews. Immunology. 2020 May
PMID: 32015472
- Molecular MRI of the Immuno-Metabolic Interplay in a Rabbit Liver Tumor Model: A Biomarker for Resistance Mechanisms in Tumor-targeted Therapy?
Savic LJ, Doemel LA, Schobert IT, Montgomery RR, Joshi N, Walsh JJ, Santana J, Pekurovsky V, Zhang X, Lin M, Adam L, Boustani A, Duncan J, Leng L, Bucala RJ, Goldberg SN, Hyder F, Coman D, Chapiro J
Radiology. 2020 Sep
PMID: 32633675
- Right and left-sided colon cancers - specificity of molecular mechanisms in tumorigenesis and progression.
Mukund K, Syulyukina N, Ramamoorthy S, Subramaniam S
BMC cancer. 2020 Apr 15
PMID: 32293332
- The Impact of the Microbiome on Immunity to Vaccination in Humans.
de Jong SE, Olin A, Pulendran B
Cell host & microbe. 2020 Aug 12
PMID: 32791110
- The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system.
Tomic A, Tomic I, Dekker CL, Maecker HT, Davis MM
Scientific data. 2019 Oct 21
PMID: 31636302
- Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans.
Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, Leung WS, Chan JMC, Chik TSH, Choi CYC, Huerta C, Paine McCullough M, Lv H, Anderson E, Edupuganti S, Upadhyay AA, Bosinger SE, Maecker HT, Khatri P, Rouphael N, Peiris M, Pulendran B
Science (New York, N.Y.). 2020 Sep 4
PMID: 32788292
- Inference of single-cell phylogenies from lineage tracing data using Cassiopeia.
Jones MG, Khodaverdian A, Quinn JJ, Chan MM, Hussmann JA, Wang R, Xu C, Weissman JS, Yosef N
Genome biology. 2020 Apr 14
PMID: 32290857
- Identification of a Master Regulator of Differentiation in Toxoplasma.
Waldman BS, Schwarz D, Wadsworth MH 2nd, Saeij JP, Shalek AK, Lourido S
Cell. 2020 Jan 23
PMID: 31955846
- Adjuvanted H5N1 influenza vaccine enhances both cross-reactive memory B cell and strain-specific naive B cell responses in humans.
Ellebedy AH, Nachbagauer R, Jackson KJL, Dai YN, Han J, Alsoussi WB, Davis CW, Stadlbauer D, Rouphael N, Chromikova V, McCausland M, Chang CY, Cortese M, Bower M, Chennareddy C, Schmitz AJ, Zarnitsyna VI, Lai L, Rajabhathor A, Kazemian C, Antia R, Mulligan MJ, Ward AB, Fremont DH, Boyd SD, Pulendran B, Krammer F, Ahmed R
Proceedings of the National Academy of Sciences of the United States of America. 2020 Jul 28
PMID: 32661157
- Type I and Type III Interferons - Induction, Signaling, Evasion, and Application to Combat COVID-19.
Park A, Iwasaki A
Cell host & microbe. 2020 Jun 10
PMID: 32464097
- Severe SARS-CoV-2 infection in humans is defined by a shift in the serum lipidome resulting in dysregulation of eicosanoid immune mediators.
Schwarz B, Sharma L, Roberts L, Peng X, Bermejo S, Leighton I, Massana AC, Farhadian S, Ko A, DelaCruz C, Bosio CM
medRxiv : the preprint server for health sciences. 2020 Jul 13
PMID: 32676616
- Germline-Encoded Affinity for Cognate Antigen Enables Vaccine Amplification of a Human Broadly Neutralizing Response against Influenza Virus.
Sangesland M, Ronsard L, Kazer SW, Bals J, Boyoglu-Barnum S, Yousif AS, Barnes R, Feldman J, Quirindongo-Crespo M, McTamney PM, Rohrer D, Lonberg N, Chackerian B, Graham BS, Kanekiyo M, Shalek AK, Lingwood D
Immunity. 2019 Oct 15
PMID: 31563464
- Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection.
Kazer SW, Aicher TP, Muema DM, Carroll SL, Ordovas-Montanes J, Miao VN, Tu AA, Ziegler CGK, Nyquist SK, Wong EB, Ismail N, Dong M, Moodley A, Berger B, Love JC, Dong KL, Leslie A, Ndhlovu ZM, Ndung'u T, Walker BD, Shalek AK
Nature medicine. 2020 Apr
PMID: 32251406
- Immunological Fingerprints of Controllers Developing Neutralizing HIV-1 Antibodies.
Martin-Gayo E, Gao C, Chen HR, Ouyang Z, Kim D, Kolb KE, Shalek AK, Walker BD, Lichterfeld M, Yu XG
Cell reports. 2020 Jan 28
PMID: 31995767
- Integrated, multicohort analysis reveals unified signature of systemic lupus erythematosus.
Haynes WA, Haddon DJ, Diep VK, Khatri A, Bongen E, Yiu G, Balboni I, Bolen CR, Mao R, Utz PJ, Khatri P
JCI insight. 2020 Feb 27
PMID: 31971918
- Induction of metabolic quiescence defines the transitional to follicular B cell switch.
Farmer JR, Allard-Chamard H, Sun N, Ahmad M, Bertocchi A, Mahajan VS, Aicher T, Arnold J, Benson MD, Morningstar J, Barmettler S, Yuen G, Murphy SJH, Walter JE, Ghebremichael M, Shalek AK, Batista F, Gerszten R, Pillai S
Science signaling. 2019 Oct 22
PMID: 31641080
More publications »
