Recent Publications
- Influenza vaccines differentially regulate the interferon response in human dendritic cell subsets.
Athale S, Banchereau R, Thompson-Snipes L, Wang Y, Palucka K, Pascual V, Banchereau J
Science translational medicine. 2017 Mar 22
PMID: 28330867
- Transcriptional signatures of influenza A/H1N1-specific IgG memory-like B cell response in older individuals.
Haralambieva IH, Ovsyannikova IG, Kennedy RB, Zimmermann MT, Grill DE, Oberg AL, Poland GA
Vaccine. 2016 Jul 25
PMID: 27317456
- Systems analysis of protective immune responses to RTS,S malaria vaccination in humans.
Kazmin D, Nakaya HI, Lee EK, Johnson MJ, van der Most R, van den Berg RA, Ballou WR, Jongert E, Wille-Reece U, Ockenhouse C, Aderem A, Zak DE, Sadoff J, Hendriks J, Wrammert J, Ahmed R, Pulendran B
Proceedings of the National Academy of Sciences of the United States of America. 2017 Feb 28
PMID: 28193898
- Multicenter Systems Analysis of Human Blood Reveals Immature Neutrophils in Males and During Pregnancy.
Blazkova J, Gupta S, Liu Y, Gaudilliere B, Ganio EA, Bolen CR, Saar-Dover R, Fragiadakis GK, Angst MS, Hasni S, Aghaeepour N, Stevenson D, Baldwin N, Anguiano E, Chaussabel D, Altman MC, Kaplan MJ, Davis MM, Furman D
Journal of immunology (Baltimore, Md. : 1950). 2017 Mar 15
PMID: 28179497
- Benchmarking Sepsis Gene Expression Diagnostics Using Public Data.
Sweeney TE, Khatri P
Critical care medicine. 2017 Jan
PMID: 27681387
- Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states.
Furman D, Chang J, Lartigue L, Bolen CR, Haddad F, Gaudilliere B, Ganio EA, Fragiadakis GK, Spitzer MH, Douchet I, Daburon S, Moreau JF, Nolan GP, Blanco P, Déchanet-Merville J, Dekker CL, Jojic V, Kuo CJ, Davis MM, Faustin B
Nature medicine. 2017 Feb
PMID: 28092664
- Human immune system variation.
Brodin P, Davis MM
Nature reviews. Immunology. 2017 Jan
PMID: 27916977
- EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.
Haynes WA, Vallania F, Liu C, Bongen E, Tomczak A, Andres-Terrè M, Lofgren S, Tam A, Deisseroth CA, Li MD, Sweeney TE, Khatri P
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2016
PMID: 27896970
- Immunosenescence-Related Transcriptomic and Immunologic Changes in Older Individuals Following Influenza Vaccination.
Kennedy RB, Ovsyannikova IG, Haralambieva IH, Oberg AL, Zimmermann MT, Grill DE, Poland GA
Frontiers in immunology. 2016
PMID: 27853459
- VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.
Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG
BMC bioinformatics. 2016 Oct 6
PMID: 27766961
- Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans.
Shen-Orr SS, Furman D, Kidd BA, Hadad F, Lovelace P, Huang YW, Rosenberg-Hasson Y, Mackey S, Grisar FA, Pickman Y, Maecker HT, Chien YH, Dekker CL, Wu JC, Butte AJ, Davis MM
Cell systems. 2016 Oct 26
PMID: 27746093
- Antigen exposure shapes the ratio between antigen-specific Tregs and conventional T cells in human peripheral blood.
Su LF, Del Alcazar D, Stelekati E, Wherry EJ, Davis MM
Proceedings of the National Academy of Sciences of the United States of America. 2016 Oct 11
PMID: 27681619
- High standards for high dimensional investigations.
Montgomery RR
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2016 Oct
PMID: 27662608
- Increased Proinflammatory Responses of Monocytes and Plasmacytoid Dendritic Cells to Influenza A Virus Infection During Pregnancy.
Le Gars M, Kay AW, Bayless NL, Aziz N, Dekker CL, Swan GE, Davis MM, Blish CA
The Journal of infectious diseases. 2016 Dec 1
PMID: 27655870
- Global Analysis of O-GlcNAc Glycoproteins in Activated Human T Cells.
Lund PJ, Elias JE, Davis MM
Journal of immunology (Baltimore, Md. : 1950). 2016 Oct 15
PMID: 27655845
- High-Resolution Analysis of Antibodies to Post-Translational Modifications Using Peptide Nanosensor Microarrays.
Lee JR, Haddon DJ, Gupta N, Price JV, Credo GM, Diep VK, Kim K, Hall DA, Baechler EC, Petri M, Varma M, Utz PJ, Wang SX
ACS nano. 2016 Dec 27
PMID: 27636738
- Age-related alterations in immune responses to West Nile virus infection.
Montgomery RR
Clinical and experimental immunology. 2017 Jan
PMID: 27612657
- Refined protocol for generating monoclonal antibodies from single human and murine B cells.
Ho IY, Bunker JJ, Erickson SA, Neu KE, Huang M, Cortese M, Pulendran B, Wilson PC
Journal of immunological methods. 2016 Nov
PMID: 27600311
- Infective endocarditis.
Holland TL, Baddour LM, Bayer AS, Hoen B, Miro JM, Fowler VG Jr
Nature reviews. Disease primers. 2016 Sep 1
PMID: 27582414
- Gene signatures associated with adaptive humoral immunity following seasonal influenza A/H1N1 vaccination.
Ovsyannikova IG, Salk HM, Kennedy RB, Haralambieva IH, Zimmermann MT, Grill DE, Oberg AL, Poland GA
Genes and immunity. 2016 Dec
PMID: 27534615
- Cytokine-stimulated Phosphoflow of PBMC Using CyTOF Mass Cytometry.
Fernandez R, Maecker H
Bio-protocol. 2015 Jun 5
PMID: 27446979
- Molecular Mechanisms Regulating T Helper 1 versus T Follicular Helper Cell Differentiation in Humans.
Schmitt N, Liu Y, Bentebibel SE, Ueno H
Cell reports. 2016 Jul 26
PMID: 27425607
- Robust classification of bacterial and viral infections via integrated host gene expression diagnostics.
Sweeney TE, Wong HR, Khatri P
Science translational medicine. 2016 Jul 6
PMID: 27384347
- Multiplex giant magnetoresistive biosensor microarrays identify interferon-associated autoantibodies in systemic lupus erythematosus.
Lee JR, Haddon DJ, Wand HE, Price JV, Diep VK, Hall DA, Petri M, Baechler EC, Balboni IM, Utz PJ, Wang SX
Scientific reports. 2016 Jun 9
PMID: 27279139
- Nasopharyngeal Microbiota, Host Transcriptome, and Disease Severity in Children with Respiratory Syncytial Virus Infection.
de Steenhuijsen Piters WA, Heinonen S, Hasrat R, Bunsow E, Smith B, Suarez-Arrabal MC, Chaussabel D, Cohen DM, Sanders EA, Ramilo O, Bogaert D, Mejias A
American journal of respiratory and critical care medicine. 2016 Nov 1
PMID: 27135599
- Bayesian network feature finder (BANFF): an R package for gene network feature selection.
Lan Z, Zhao Y, Kang J, Yu T
Bioinformatics (Oxford, England). 2016 Dec 1
PMID: 27503223
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